4 papers
DSBplot: Indels in DNA Double-strand Break Repair Experiments
Tejasvi Channagiri, Margherita Maria Ferrari, Youngkyu Jeon +3
Double-strand breaks (DSBs) in DNA are naturally occurring destructive events in all organisms that may lead to genome instability. Cells employ various repair methods known as non…
Betti Numbers of Prodsimplicial Complexes for Directed Graphs with Applications to Word Reductions
Lina Fajardo Gómez, Margherita Maria Ferrari, Nataša Jonoska +1
We propose custom made cell complexes, in particular prodsimplicial complexes, in order to analyze data consisting of directed graphs. These are constructed by attaching cells that…
On non-isomorphic biminimal pots realizing the cube
M. M. Ferrari, A. Pasotti, T. Traetta
In this paper, we disprove a conjecture recently proposed in [L. Almodovar et al., arXiv:2108.00035] on the non-existence of biminimal pots realizing the cube, namely pots with the…
Insertions Yielding Equivalent Double Occurrence Words
Daniel A. Cruz, Margherita Maria Ferrari, Natasa Jonoska +2
A double occurrence word (DOW) is a word in which every symbol appears exactly twice; two DOWs are equivalent if one is a symbol-to-symbol image of the other. We consider the so ca…