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cond-mat.soft2020
Computing the elastic mechanical properties of rod-like DNA nanostructures
Hemani Chhabra, Garima Mishra, Yijing Cao +4
To study the elastic properties of rod-like DNA nanostructures, we perform long simulations of these structure using the oxDNA coarse-grained model. By analysing the fluctuations i…
cond-mat.soft2020
The oxDNA coarse-grained model as a tool to simulate DNA origami
Jonathan P. K. Doye, Hannah Fowler, Domen Prešern +12
This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.
cond-mat.soft2018
Chiral shape fluctuations and the origin of chirality in cholesteric phases of DNA origamis
Maxime M. C. Tortora, Garima Mishra, Domen Presern +1
Lyotropic cholesteric liquid crystal phases are ubiquitously observed in biological and synthetic polymer solutions, characterized by a complex interplay between thermal fluctuatio…