2 papers
q-bio.QM2018
Compiling Combinatorial Genetic Circuits with Semantic Inference
William Waites, Goksel Misirli, Matteo Cavaliere +2
A central strategy of synthetic biology is to understand the basic processes of living creatures through engineering organisms using the same building blocks. Biological machines d…
q-bio.MN2018
Annotations for Rule-Based Models
Matteo Cavaliere, Vincent Danos, Ricardo Honorato-Zimmer +1
The chapter reviews the syntax to store machine-readable annotations and describes the mapping between rule-based modelling entities (e.g., agents and rules) and these annotations.…