activity
20182024
most citedNatural language understanding for task oriented dialog in the biomedical domain in a low resources context

7 citations · 24 across the 9 of their papers we have counts for

collaborators

9 papers

cs.LG2024

Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning

Lillian Muyama, Estelle Lu, Geoffrey Cheminet +5

Clinical diagnostic guidelines outline the key questions to answer to reach a diagnosis. Inspired by guidelines, we aim to develop a model that learns from electronic health record…

cs.CL2024

Facilitating phenotyping from clinical texts: the medkit library

Antoine Neuraz, Ghislain Vaillant, Camila Arias +8

Phenotyping consists in applying algorithms to identify individuals associated with a specific, potentially complex, trait or condition, typically out of a collection of Electronic…

cs.LG2024

Deep Reinforcement Learning for Personalized Diagnostic Decision Pathways Using Electronic Health Records: A Comparative Study on Anemia and Systemic Lupus Erythematosus

Lillian Muyama, Antoine Neuraz, Adrien Coulet

Background: Clinical diagnosis is typically reached by following a series of steps recommended by guidelines authored by colleges of experts. Accordingly, guidelines play a crucial…

q-bio.QM2023★ 5 cited

The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials

Sophie Quennelle, Maxime Douillet, Lisa Friedlander +4

In medical research, the traditional way to collect data, i.e. browsing patient files, has been proven to induce bias, errors, human labor and costs. We propose a semi-automated sy…

cs.LG2023★ 1 cited

Extracting Diagnosis Pathways from Electronic Health Records Using Deep Reinforcement Learning

Lillian Muyama, Antoine Neuraz, Adrien Coulet

Clinical diagnosis guidelines aim at specifying the steps that may lead to a diagnosis. Inspired by guidelines, we aim to learn the optimal sequence of actions to perform in order…

cs.CL2022★ 6 cited

Learning structures of the French clinical language:development and validation of word embedding models using 21 million clinical reports from electronic health records

Basile Dura, Charline Jean, Xavier Tannier +4

Background Clinical studies using real-world data may benefit from exploiting clinical reports, a particularly rich albeit unstructured medium. To that end, natural language proces…

cs.CL2020★ 3 cited

Learning the grammar of drug prescription: recurrent neural network grammars for medication information extraction in clinical texts

Ivan Lerner, Jordan Jouffroy, Anita Burgun +1

In this study, we evaluated the RNNG, a neural top-down transition based parser, for medication information extraction in clinical texts. We evaluated this model on a French clinic…

cs.CL2018★ 7 cited

Natural language understanding for task oriented dialog in the biomedical domain in a low resources context

Antoine Neuraz, Leonardo Campillos Llanos, Anita Burgun +1

In the biomedical domain, the lack of sharable datasets often limit the possibility of developing natural language processing systems, especially dialogue applications and natural…

cs.LG2018★ 2 cited

A Model-Based Reinforcement Learning Approach for a Rare Disease Diagnostic Task

Rémi Besson, Erwan Le Pennec, Stéphanie Allassonnière +3

In this work, we present our various contributions to the objective of building a decision support tool for the diagnosis of rare diseases. Our goal is to achieve a state of knowle…