3 papers
cs.SE2021
Viash: from scripts to pipelines
Robrecht Cannoodt, Hendrik Cannoodt, Eric Van de Kerckhove +3
Most bioinformatics pipelines consist of software components that are tightly coupled to the logic of the pipeline itself. This limits reusability of the individual components in t…
cs.SE2020
The Rockerverse: Packages and Applications for Containerization with R
Daniel Nüst, Dirk Eddelbuettel, Dom Bennett +22
The Rocker Project provides widely used Docker images for R across different application scenarios. This article surveys downstream projects that build upon the Rocker Project imag…
q-bio.QM2018
Essential guidelines for computational method benchmarking
Lukas M. Weber, Wouter Saelens, Robrecht Cannoodt +6
In computational biology and other sciences, researchers are frequently faced with a choice between several computational methods for performing data analyses. Benchmarking studies…