activity
20182023
most citedOntoProtein: Protein Pretraining With Gene Ontology Embedding

50 citations · 69 across the 12 of their papers we have counts for

collaborators

12 papers

cs.LG2023★ 1 cited

Graph Sampling-based Meta-Learning for Molecular Property Prediction

Xiang Zhuang, Qiang Zhang, Bin Wu +3

Molecular property is usually observed with a limited number of samples, and researchers have considered property prediction as a few-shot problem. One important fact that has been…

cs.CV2023★ 2 cited

Knowledge-Enhanced Hierarchical Information Correlation Learning for Multi-Modal Rumor Detection

Jiawei Liu, Jingyi Xie, Fanrui Zhang +2

The explosive growth of rumors with text and images on social media platforms has drawn great attention. Existing studies have made significant contributions to cross-modal informa…

cs.LG2023★ 2 cited

Newton-Cotes Graph Neural Networks: On the Time Evolution of Dynamic Systems

Lingbing Guo, Weiqing Wang, Zhuo Chen +5

Reasoning system dynamics is one of the most important analytical approaches for many scientific studies. With the initial state of a system as input, the recent graph neural netwo…

cs.AI2022

Deep Reinforcement Learning for Entity Alignment

Lingbing Guo, Yuqiang Han, Qiang Zhang +1

Embedding-based methods have attracted increasing attention in recent entity alignment (EA) studies. Although great promise they can offer, there are still several limitations. The…

cs.CV2022★ 4 cited

On Exploring Pose Estimation as an Auxiliary Learning Task for Visible-Infrared Person Re-identification

Yunqi Miao, Nianchang Huang, Xiao Ma +2

Visible-infrared person re-identification (VI-ReID) has been challenging due to the existence of large discrepancies between visible and infrared modalities. Most pioneering approa…

cs.AI2022★ 1 cited

Prompt-Guided Injection of Conformation to Pre-trained Protein Model

Qiang Zhang, Zeyuan Wang, Yuqiang Han +3

Pre-trained protein models (PTPMs) represent a protein with one fixed embedding and thus are not capable for diverse tasks. For example, protein structures can shift, namely protei…

cs.LG2022★ 2 cited

Knowledge-informed Molecular Learning: A Survey on Paradigm Transfer

Yin Fang, Zhuo Chen, Xiaohui Fan +1

Machine learning, notably deep learning, has significantly propelled molecular investigations within the biochemical sphere. Traditionally, modeling for such research has centered…

q-bio.BM2022★ 50 cited

OntoProtein: Protein Pretraining With Gene Ontology Embedding

Ningyu Zhang, Zhen Bi, Xiaozhuan Liang +6

Self-supervised protein language models have proved their effectiveness in learning the proteins representations. With the increasing computational power, current protein language…

cs.LG2021★ 2 cited

Molecular Contrastive Learning with Chemical Element Knowledge Graph

Yin Fang, Qiang Zhang, Haihong Yang +7

Molecular representation learning contributes to multiple downstream tasks such as molecular property prediction and drug design. To properly represent molecules, graph contrastive…

cs.CL2021

Principled Representation Learning for Entity Alignment

Lingbing Guo, Zequn Sun, Mingyang Chen +3

Embedding-based entity alignment (EEA) has recently received great attention. Despite significant performance improvement, few efforts have been paid to facilitate understanding of…

cs.CL2018★ 4 cited

Improving Medical Short Text Classification with Semantic Expansion Using Word-Cluster Embedding

Ying Shen, Qiang Zhang, Jin Zhang +3

Automatic text classification (TC) research can be used for real-world problems such as the classification of in-patient discharge summaries and medical text reports, which is bene…

cs.CL2018★ 1 cited

MedSim: A Novel Semantic Similarity Measure in Bio-medical Knowledge Graphs

Kai Lei, Kaiqi Yuan, Qiang Zhang +1

We present MedSim, a novel semantic SIMilarity method based on public well-established bio-MEDical knowledge graphs (KGs) and large-scale corpus, to study the therapeutic substitut…