55 citations · 158 across the 6 of their papers we have counts for
6 papers
Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization
Juan M. Escorcia-Rodríguez, Andreas Tauch, Julio A. Freyre-González
Some organism-specific databases about regulation in bacteria have become larger, accelerated by high-throughput methodologies, while others are no longer updated or accessible. Ea…
Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
Adrian I. Campos-González, Julio A. Freyre-González
Genetic regulatory networks (GRNs) have been widely studied, yet there is a lack of understanding with regards to the final size and properties of these networks, mainly due to no…
Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: novel insights from a dataset with a high genomic coverage
Julio A. Freyre-González, Andreas Tauch
Corynebacterium glutamicum is a Gram-positive, anaerobic, rod-shaped soil bacterium able to grow on a diversity of carbon sources like sugars and organic acids. It is a biotechnolo…
Abasy Atlas: A comprehensive inventory of systems, global network properties and systems-level elements across bacteria
Miguel A. Ibarra-Arellano, Adrián I. Campos-González, Luis G. Treviño-Quintanilla +2
The availability of databases electronically encoding curated regulatory networks and of high-throughput technologies and methods to discover regulatory interactions provides an in…
Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach
Julio A. Freyre-González, José A. Alonso-Pavón, Luis G. Treviño-Quintanilla +1
Background: Previous studies have used different methods in an effort to extract the modular organization of transcriptional regulatory networks (TRNs). However, these approaches a…
Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach
Julio A. Freyre-González, Luis G. Treviño-Quintanilla, Ilse A. Valtierra-Gutiérrez +2
Escherichia coli and Bacillus subtilis are two of the best-studied prokaryotic model organisms. Previous analyses of their transcriptional regulatory networks have shown that they…