185 citations · 207 across the 6 of their papers we have counts for
6 papers
Computation of Immediate Neighbours of Monotone Boolean Functions
José E. R. Cury, Patrícia Tenera Roxo, Vasco Manquinho +2
Boolean networks constitute relevant mathematical models to study the behaviours of genetic and signalling networks. These networks define regulatory influences between molecular n…
Partial Order on the set of Boolean Regulatory Functions
José E. R. Cury, Pedro T. Monteiro, Claudine Chaouiya
Logical models have been successfully used to describe regulatory and signaling networks without requiring quantitative data. However, existing data is insufficient to adequately d…
Local negative circuits and cyclic attractors in Boolean networks with at most five components
Elisa Tonello, Etienne Farcot, Claudine Chaouiya
We consider the following question on the relationship between the asymptotic behaviours of asynchronous dynamics of Boolean networks and their regulatory structures: does the pres…
Quantification of reachable attractors in asynchronous discrete dynamics
Nuno D. Mendes, Pedro T. Monteiro, Jorge Carneiro +2
Motivation: Models of discrete concurrent systems often lead to huge and complex state transition graphs that represent their dynamics. This makes difficult to analyse dynamical pr…
SBML Qualitative Models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Claudine Chaouiya, Duncan Berenguier, Sarah M Keating +21
Background: Qualitative frameworks, especially those based on the logical discrete formalism, are increasingly used to model regulatory and signalling networks. A major advantage o…
Large-scale generation of computational models from biochemical pathway maps
Finja Büchel, Nicolas Rodriguez, Neil Swainston +23
Background: Systems biology projects and omics technologies have led to a growing number of biochemical pathway reconstructions. However, mathematical models are still most often c…