3 papers
q-bio.QM2020
GraphKKE: Graph Kernel Koopman Embedding for Human Microbiome Analysis
Kateryna Melnyk, Stefan Klus, Grégoire Montavon +1
More and more diseases have been found to be strongly correlated with disturbances in the microbiome constitution, e.g., obesity, diabetes, or some cancer types. Thanks to modern h…
math.NA2019
A convergent discretisation method for transition path theory for diffusion processes
Nada Cvetković, Tim Conrad, Han Cheng Lie
Transition path theory (TPT) for diffusion processes is a framework for analysing the transitions of multiscale ergodic diffusion processes between disjoint metastable subsets of s…
math.OC2019
Learning chemical reaction networks from trajectory data
Wei Zhang, Stefan Klus, Tim Conrad +1
We develop a data-driven method to learn chemical reaction networks from trajectory data. Modeling the reaction system as a continuous-time Markov chain and assuming the system is…