11 citations · 18 across the 7 of their papers we have counts for
3 papers · 1 filter
MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing
Giuseppe Sacco, Jianhui Li, Redmond P. Smyth +2
RNA function is tied to secondary structure, operating through dynamic and heterogeneous structural ensembles. While current analysis tools typically output single static structure…
Making PLUMED fly: a tutorial on optimizing performance
Daniele Rapetti, Massimiliano Bonomi, Carlo Camilloni +2
PLUMED is an open-source software package that is widely used for analyzing and enhancing molecular dynamics simulations that works in conjunction with most available molecular dyn…
Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges
Giuseppe Sacco, Giovanni Bussi, Guido Sanguinetti
Predicting the secondary structure of RNA is a core challenge in computational biology, essential for understanding molecular function and designing novel therapeutics. The field h…