30 citations · 31 across the 3 of their papers we have counts for
4 papers · 1 filter
On the importance of assessing topological convergence in Bayesian phylogenetic inference
Marius Brusselmans, Luiz Max Carvalho, Samuel L. Hong +7
Modern phylogenetics research is often performed within a Bayesian framework, using sampling algorithms such as Markov chain Monte Carlo (MCMC) to approximate the posterior distrib…
Estimating effective population size changes from preferentially sampled genetic sequences
Michael D. Karcher, Marc A. Suchard, Gytis Dudas +1
Coalescent theory combined with statistical modeling allows us to estimate effective population size fluctuations from molecular sequences of individuals sampled from a population…
Fitting stochastic epidemic models to gene genealogies using linear noise approximation
Mingwei Tang, Gytis Dudas, Trevor Bedford +1
Phylodynamics is a set of population genetics tools that aim at reconstructing demographic history of a population based on molecular sequences of individuals sampled from the popu…
Integrating influenza antigenic dynamics with molecular evolution
Trevor Bedford, Marc A. Suchard, Philippe Lemey +7
Influenza viruses undergo continual antigenic evolution allowing mutant viruses to evade host immunity acquired to previous virus strains. Antigenic phenotype is often assessed thr…