1 citations · 1 across the 4 of their papers we have counts for
4 papers
Application of Markov Structure of Genomes to Outlier Identification and Read Classification
Alan F. Karr, Jason Hauzel, Adam A. Porter +1
In this paper we apply the structure of genomes as second-order Markov processes specified by the distributions of successive triplets of bases to two bioinformatics problems: iden…
Measuring Quality of DNA Sequence Data via Degradation
Alan F. Karr, Jason Hauzel, Adam A. Porter +1
We propose and apply a novel paradigm for characterization of genome data quality, which quantifies the effects of intentional degradation of quality. The rationale is that the hig…
Specified Certainty Classification, with Application to Read Classification for Reference-Guided Metagenomic Assembly
Alan F. Karr, Jason Hauzel, Prahlad Menon +2
Specified Certainty Classification (SCC) is a new paradigm for employing classifiers whose outputs carry uncertainties, typically in the form of Bayesian posterior probabilities. B…
iGen: Dynamic Interaction Inference for Configurable Software
ThanhVu Nguyen, Ugur Koc, Javran Cheng +2
To develop, analyze, and evolve today's highly configurable software systems, developers need deep knowledge of a system's configuration options, e.g., how options need to be set t…