201 citations · 459 across the 6 of their papers we have counts for
6 papers
A minimal G-model for rebuilding whole genome structures from haploid single-cell Hi-C data
S. Wettermann, M. Brems, J. T. Siebert +3
We present a minimal computational model, which allows very fast, on-the-fly construction of three dimensional haploid interphase genomes from single cell Hi-C contact maps using t…
Critical behavior of active Brownian particles
Jonathan Tammo Siebert, Florian Dittrich, Friederike Schmid +3
We study active Brownian particles as a paradigm for genuine non-equilibrium phase transitions. Access to the critical point in computer simulations is obstructed by the fact that…
Phase behavior of active Brownian disks, spheres, and dumbbells
Jonathan Tammo Siebert, Janina Letz, Thomas Speck +1
In this paper we provide high precision estimates of the phase diagram of active Brownian particles. We extract coexisting densities from simulations of phase separated states in a…
Estimation of the critical behavior in an active colloidal system with Vicsek-like interactions
Benjamin Trefz, Jonathan Tammo Siebert, Thomas Speck +2
We study numerically the critical behavior of a modified, active Asakura-Oosawa model for colloid-polymer mixtures. The colloids are modeled as self-propelled particles with Vicsek…
Negative interfacial tension in phase-separated active suspensions
Julian Bialké, Hartmut Löwen, Thomas Speck
We study numerically a model for active suspensions of self-propelled repulsive particles, for which a stable phase separation into a dilute and a dense phase is observed. We explo…
How molecular knots can pass through each other
Benjamin Trefz, Jonathan Siebert, Peter Virnau
We propose a mechanism in which two molecular knots pass through each other and swap positions along a polymer strand. Associated free energy barriers in our simulations only amoun…