4 citations · 5 across the 7 of their papers we have counts for
10 papers
PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences
Sarwan Ali, Babatunde Bello, Prakash Chourasia +3
COVID-19 pandemic, is still unknown and is an important open question. There are speculations that bats are a possible origin. Likewise, there are many closely related (corona-) vi…
Robust Representation and Efficient Feature Selection Allows for Effective Clustering of SARS-CoV-2 Variants
Zahra Tayebi, Sarwan Ali, Murray Patterson
The widespread availability of large amounts of genomic data on the SARS-CoV-2 virus, as a result of the COVID-19 pandemic, has created an opportunity for researchers to analyze th…
Efficient Analysis of COVID-19 Clinical Data using Machine Learning Models
Sarwan Ali, Yijing Zhou, Murray Patterson
Because of the rapid spread of COVID-19 to almost every part of the globe, huge volumes of data and case studies have been made available, providing researchers with a unique oppor…
Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences
Sarwan Ali, Murray Patterson
With the rapid global spread of COVID-19, more and more data related to this virus is becoming available, including genomic sequence data. The total number of genomic sequences tha…
Effective and scalable clustering of SARS-CoV-2 sequences
Sarwan Ali, Tamkanat-E-Ali, Muhammad Asad Khan +2
SARS-CoV-2, like any other virus, continues to mutate as it spreads, according to an evolutionary process. Unlike any other virus, the number of currently available sequences of SA…
A k-mer Based Approach for SARS-CoV-2 Variant Identification
Sarwan Ali, Bikram Sahoo, Naimat Ullah +3
With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (…
A rearrangement distance for fully-labelled trees
Giulia Bernardini, Paola Bonizzoni, Gianluca Della Vedova +1
The problem of comparing trees representing the evolutionary histories of cancerous tumors has turned out to be crucial, since there is a variety of different methods which typical…
Lateral Gene Transfer, Rearrangement and Reconciliation
Murray Patterson, Gergely J Szöllősi, Vincent Daubin +1
Background. Models of ancestral gene order reconstruction have progressively integrated different evolutionary patterns and processes such as unequal gene content, gene duplication…
Hypergraph covering problems motivated by genome assembly questions
Cedric Chauve, Murray Patterson, Ashok Rajaraman
The Consecutive-Ones Property (C1P) is a classical concept in discrete mathematics that has been used in several genomics applications, from physical mapping of contemporary genome…
Hardness Results for the Gapped Consecutive-Ones Property
Cedric Chauve, Jan Manuch, Murray Patterson
Motivated by problems of comparative genomics and paleogenomics, in [Chauve et al., 2009], the authors introduced the Gapped Consecutive-Ones Property Problem (k,delta)-C1P: given…