103 citations · 179 across the 7 of their papers we have counts for
7 papers
The Integration Host Factor is a pH-responsive protein that switches from DNA bending to DNA bridging in acidic biofilm-like conditions
Dinesh Parthasarathy, Saminathan Ramakrishnan, Georgia Tsang +9
The Integration Host Factor (IHF) is a nucleoid-associated protein critical for both DNA compaction and biofilm stability. While its role in DNA packaging within the cell is well u…
The need to implement FAIR principles in biomolecular simulations
Rommie Amaro, Johan Åqvist, Ivet Bahar +125
This letter illustrates the opinion of the molecular dynamics (MD) community on the need to adopt a new FAIR paradigm for the use of molecular simulations. It highlights the necess…
Correlating fluorescence microscopy, optical and magnetic tweezers to study single chiral biopolymers such as DNA
Jack W Shepherd, Sebastien Guilbaud, Zhaokun Zhou +7
Biopolymer topology is critical for determining interactions inside cell environments, exemplified by DNA where its response to mechanical perturbation is as important as biochemic…
Fluidification of entanglements by a DNA bending protein
Yair A. G. Fosado, Jamieson Howard, Simon Weir +3
In spite of the nanoscale and single-molecule insights into how nucleoid associated proteins (NAPs) interact with DNA, their role in modulating the mesoscale viscoelasticity of the…
The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNA
Jack W Shepherd, Robert J Greenall, Matt I J Probert +2
The double-helical structure of DNA results from canonical base pairing and stacking interactions. However, variations from steady-state conformations result from mechanical pertur…
Reply to Comment on 'Length Scale Dependence of DNA Mechanical Properties'
Agnes Noy, Ramin Golestanian
Reply to Comment on 'Length Scale Dependence of DNA Mechanical Properties'
Length scale dependence of DNA mechanical properties
Agnes Noy, Ramin Golestanian
Although mechanical properties of DNA are well characterized at the kilo base-pair range, a number of recent experiments have suggested that DNA is more flexible at shorter length…