activity
20132019
most citedCreation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0

93 citations · 101 across the 5 of their papers we have counts for

collaborators

5 papers

cs.DS2019★ 3 cited

A near-optimal algorithm for approximating the John Ellipsoid

Michael B. Cohen, Ben Cousins, Yin Tat Lee +1

We develop a simple and efficient algorithm for approximating the John Ellipsoid of a symmetric polytope. Our algorithm is near optimal in the sense that our time complexity matche…

q-bio.QM2017★ 93 cited

Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0

Laurent Heirendt, Sylvain Arreckx, Thomas Pfau +52

COnstraint-Based Reconstruction and Analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental data and quantitative prediction of physico…

cs.DS2016★ 2 cited

Approximately Sampling Elements with Fixed Rank in Graded Posets

Prateek Bhakta, Ben Cousins, Matthew Fahrbach +1

Graded posets frequently arise throughout combinatorics, where it is natural to try to count the number of elements of a fixed rank. These counting problems are often $\#\textbf{P}…

cs.DS2014★ 3 cited

Gaussian Cooling and O*(n^3) Algorithms for Volume and Gaussian Volume

Ben Cousins, Santosh Vempala

We present an randomized algorithm for estimating the volume of a well-rounded convex body given by a membership oracle, improving on the previous best complexity of $O^…

cs.DS2013

A Cubic Algorithm for Computing Gaussian Volume

Ben Cousins, Santosh Vempala

We present randomized algorithms for sampling the standard Gaussian distribution restricted to a convex set and for estimating the Gaussian measure of a convex set, in the general…