activity
20162019
most citedSimulating with AcCoRD: Actor-Based Communication via Reaction-Diffusion

57 citations · 161 across the 10 of their papers we have counts for

collaborators

10 papers

q-bio.NC2019★ 3 cited

Modeling Interference-Free Neuron Spikes with Optogenetic Stimulation

Adam Noel, Shayan Monabbati, Dimitrios Makrakis +1

This paper predicts the ability to externally control the firing times of a cortical neuron whose behavior follows the Izhikevich neuron model. The Izhikevich neuron model provides…

physics.chem-ph2018★ 16 cited

Algorithm for Mesoscopic Advection-Diffusion

Adam Noel, Dimitrios Makrakis

In this paper, an algorithm is presented to calculate the transition rates between adjacent mesoscopic subvolumes in the presence of flow and diffusion. These rates can be integrat…

q-bio.CB2017★ 1 cited

Using Game Theory for Real-Time Behavioural Dynamics in Microscopic Populations with Noisy Signalling

Adam Noel, Yuting Fang, Nan Yang +2

This paper introduces the application of game theory to understand noisy real-time signalling and the resulting behavioural dynamics in microscopic populations such as bacteria and…

q-bio.NC2017★ 2 cited

Timing Control of Single Neuron Spikes with Optogenetic Stimulation

Adam Noel, Shayan Monabbati, Dimitrios Makrakis +1

This paper predicts the ability to externally control the firing times of a cortical neuron whose behavior follows the Izhikevich neuron model. The Izhikevich neuron model provides…

q-bio.CB2017★ 6 cited

Effect of Local Population Uncertainty on Cooperation in Bacteria

Adam Noel, Yuting Fang, Nan Yang +2

Bacteria populations rely on mechanisms such as quorum sensing to coordinate complex tasks that cannot be achieved by a single bacterium. Quorum sensing is used to measure the loca…

q-bio.NC2017★ 8 cited

Distortion Distribution of Neural Spike Train Sequence Matching with Optogenetics

Adam Noel, Dimitrios Makrakis, Andrew W. Eckford

This paper uses a simple optogenetic model to compare the timing distortion between a randomly-generated target spike sequence and an externally-stimulated neuron spike sequence. O…

q-bio.NC2017★ 3 cited

Root Mean Square Error of Neural Spike Train Sequence Matching with Optogenetics

Adam Noel, Dimitrios Makrakis, Andrew W. Eckford

Optogenetics is an emerging field of neuroscience where neurons are genetically modified to express light-sensitive receptors that enable external control over when the neurons fir…

physics.chem-ph2016★ 57 cited

Simulating with AcCoRD: Actor-Based Communication via Reaction-Diffusion

Adam Noel, Karen C. Cheung, Robert Schober +2

This paper introduces AcCoRD (Actor-based Communication via Reaction-Diffusion) version 1.0. AcCoRD is a sandbox reaction-diffusion solver designed for the study of molecular commu…

cs.ET2016★ 28 cited

Channel Impulse Responses in Diffusive Molecular Communication with Spherical Transmitters

Adam Noel, Dimitrios Makrakis, Abdelhakim Hafid

Molecular communication is an emerging paradigm for systems that rely on the release of molecules as information carriers. Communication via molecular diffusion is a popular strate…

cs.ET2016★ 37 cited

Active Versus Passive: Receiver Model Transforms for Diffusive Molecular Communication

Adam Noel, Yansha Deng, Dimitrios Makrakis +1

This paper presents an analytical comparison of active and passive receiver models in diffusive molecular communication. In the active model, molecules are absorbed when they colli…