6 citations · 9 across the 2 of their papers we have counts for
6 papers
A Numerical Investigation of Analyte Size Effects in Nanopore Sensing Systems
Kai Szuttor, Patrick Kreissl, Christian Holm
We investigate the ionic current modulation in DNA nanopore translocation setups by numerically solving the electrokinetic mean-field equations for an idealized model. Specifically…
Modeling the Current Modulation of Bundled DNA Structures in Nanopores
Kai Szuttor, Florian Weik, Jean-Noël Grad +1
We investigate the salt-dependent current modulation of bundled DNA nanostructures in a nanopore. To this end, we developed four simulation models for a 2x2 origami structure with…
The Influence of Motility on Bacterial Accumulation in a Microporous Channel
Miru Lee, Christoph Lohrmann, Kai Szuttor +2
We study the transport of bacteria in a porous media modeled by a square channel containing one cylindrical obstacle via molecular dynamics simulations coupled to a lattice Boltzma…
Modeling Gel Swelling Equilibrium in Mean-Field: From explicit Models to Poisson-Boltzmann
Jonas Landsgesell, David Sean, Patrick Kreissl +2
We develop a double mean-field theory for charged macrogels immersed in electrolyte solutions in the spirit of the cell model approach. We first demonstrate that the equilibrium sa…
A Computational Model for Bacterial Run-and-Tumble Motion
Miru Lee, Kai Szuttor, Christian Holm
In our article we present a computational model for the simulation of self-propelled anisotropic bacteria. To this end we use a self-propelled particle model and augment it with a…
ESPResSo 4.0 -- An Extensible Software Package for Simulating Soft Matter Systems
Florian Weik, Rudolf Weeber, Kai Szuttor +7
ESPResSo 4.0 is an extensible simulation package for research on soft matter. This versatile molecular dynamics program was originally developed for coarse-grained simulations of c…