52 citations · 370 across the 37 of their papers we have counts for
38 papers
Modelling cargo transport in crowded environments: effect of motor association to cargos
Sutapa Mukherji, Dhruvi K. Patel
In intracellular transports, motor proteins transport macromolecules as cargos to desired locations by moving on biopolymers such as microtubules. Recent experiments suggest that c…
Small RNA driven feed-forward loop: Fine-tuning of protein synthesis through sRNA mediated cross-talk
Swathi Tej, Sutapa Mukherji
Often in bacterial regulatory networks, small noncoding RNAs (sRNA) interact with several mRNA species. The competition among mRNAs for binding to the same pool of sRNA might lead…
Small RNA driven feed-forward loop: critical role of sRNA in noise filtering
Swathi Tej, Kumar Gaurav, Sutapa Mukherji
A feed-forward loop (FFL) is a common gene-regulatory motif in which usually the upstream regulator is a protein, a transcription factor, that regulates the expression of the targe…
Global Density Profile for Asymmetric Simple Exclusion Process from Renormalization Group Flows
Sutapa Mukherji, Somendra M. Bhattacharjee
The totally asymmetric simple exclusion process along with particle adsorption and evaporation kinetics is a model of boundary-induced nonequilibrium phase transition. In the conti…
Threshold response and bistability in gene regulation by small noncoding RNA
Sutapa Mukherji
In this paper, we study through mathematical modelling the combined effect of transcriptional and translational regulation by proteins and small noncoding RNAs (sRNA) in a genetic…
Renormalization group analysis for an asymmetric simple exclusion process
Sutapa Mukherji
A perturbative renormalization group method is used to obtain steady-state density profiles of a particle non-conserving asymmetric simple exclusion process. This method allows us…