46 citations · 61 across the 5 of their papers we have counts for
5 papers
Visual Support for the Loop Grafting Workflow on Proteins
Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias +5
In understanding and redesigning the function of proteins in modern biochemistry, protein engineers are increasingly focusing on exploring regions in proteins called loops. Analyzi…
ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework
Matúš Talčík, Filip Opálený, Tereza Clarence +4
We present ChromoSkein, a web-based tool for visualizing three-dimensional chromatin models. The spatial organization of chromatin is essential to its function. Experimental method…
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration
Pavol Ulbrich, Manuela Waldner, Katarína Furmanová +4
We present sMolBoxes, a dataflow representation for the exploration and analysis of long molecular dynamics (MD) simulations. When MD simulations reach millions of snapshots, a fra…
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes
Katarína Furmanová, Adam Jurčík, Barbora Kozlíková +2
When studying multi-body protein complexes, biochemists use computational tools that can suggest hundreds or thousands of their possible spatial configurations. However, it is not…
Taggle: Combining Overview and Details in Tabular Data Visualizations
Katarina Furmanova, Samuel Gratzl, Holger Stitz +4
Most tabular data visualization techniques focus on overviews, yet many practical analysis tasks are concerned with investigating individual items of interest. At the same time, re…