11 citations · 28 across the 9 of their papers we have counts for
9 papers
Ritgard: T(r)opical Islands of Socio-Technical Artifacts on GitHub
Adam Štěpánek, Marco Raglianti, Jan Byška +2
A software project is more than just code. Non-code artifacts often document the human processes and decisions behind source code. The rationale behind a library change, an archite…
T(r)opical Islands: Visualizing & Understanding Socio-Technical Artifacts
Adam Štěpánek, Marco Raglianti, Vít Rusňák +3
Projects hosted on collaborative software development platforms, such as GitHub, include many non-code artifacts documenting the project's lifecycle, with its challenges, plans, de…
Helveg: Diagrams for Software Documentation
Adam Štěpánek, David Kuťák, Barbora Kozlíková +1
Software developers often have to gain an understanding of a codebase. Be it programmers getting onboarded onto a team project or, for example, developers striving to grasp an exte…
Interactive Diagrams for Software Documentation
Adam Štěpánek, David Kuťák, Barbora Kozlíková +1
Getting acquainted with a large codebase can be a daunting task for software developers, both new and seasoned. The description of a codebase and its development should be the purp…
Visual Support for the Loop Grafting Workflow on Proteins
Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias +5
In understanding and redesigning the function of proteins in modern biochemistry, protein engineers are increasingly focusing on exploring regions in proteins called loops. Analyzi…
ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework
Matúš Talčík, Filip Opálený, Tereza Clarence +4
We present ChromoSkein, a web-based tool for visualizing three-dimensional chromatin models. The spatial organization of chromatin is essential to its function. Experimental method…
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration
Pavol Ulbrich, Manuela Waldner, Katarína Furmanová +4
We present sMolBoxes, a dataflow representation for the exploration and analysis of long molecular dynamics (MD) simulations. When MD simulations reach millions of snapshots, a fra…
Scale-Space Splatting: Reforming Spacetime for the Cross-Scale Exploration of Integral Measures in Molecular Dynamics
Juraj Pálenik, Jan Byška, Stefan Bruckner +1
Understanding large amounts of spatiotemporal data from particle-based simulations, such as molecular dynamics, often relies on the computation and analysis of aggregate measures.…
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes
Katarína Furmanová, Adam Jurčík, Barbora Kozlíková +2
When studying multi-body protein complexes, biochemists use computational tools that can suggest hundreds or thousands of their possible spatial configurations. However, it is not…