393 citations · 2.5k across the 60 of their papers we have counts for
6 papers · 1 filter
Stochastic Resetting: A Non-Equilibrium Framework for Prediction, Inference and Design
Tommer D. Keidar, Sagi Meir, Nir Sherf +4
Stochastic resetting has evolved from a simple model of diffusive search acceleration into a general framework for predicting, inferring, and controlling stochastic dynamics far fr…
Inference of non-exponential kinetics through stochastic resetting
Ofir Blumer, Shlomi Reuveni, Barak Hirshberg
We present an inference scheme of long timescale, non-exponential kinetics from Molecular Dynamics simulations accelerated by stochastic resetting. Standard simulations provide val…
Accelerating Molecular Dynamics through Informed Resetting
Jonathan R. Church, Ofir Blumer, Tommer D. Keidar +3
We present a procedure for enhanced sampling of molecular dynamics simulations through informed stochastic resetting. Many phenomena, such as protein folding and crystal nucleation…
Short-Time Infrequent Metadynamics for Improved Kinetics Inference
Ofir Blumer, Shlomi Reuveni, Barak Hirshberg
Infrequent Metadynamics is a popular method to obtain the rates of long timescale processes from accelerated simulations. The inference procedure is based on rescaling the first-pa…
Resetting Metadynamics
Ofir Blumer, Shlomi Reuveni, Barak Hirshberg
Metadynamics is a powerful method to accelerate molecular dynamics simulations, but its efficiency critically depends on the identification of collective variables that capture the…
Stochastic Resetting for Enhanced Sampling
Ofir Blumer, Shlomi Reuveni, Barak Hirshberg
We present a method for enhanced sampling of molecular dynamics simulations using stochastic resetting. Various phenomena, ranging from crystal nucleation to protein folding, occur…