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q-bio.NC2019
DISCo: Deep learning, Instance Segmentation, and Correlations for cell segmentation in calcium imaging
Elke Kirschbaum, Alberto Bailoni, Fred A. Hamprecht
Calcium imaging is one of the most important tools in neurophysiology as it enables the observation of neuronal activity for hundreds of cells in parallel and at single-cell resolu…
q-bio.NC2018
LeMoNADe: Learned Motif and Neuronal Assembly Detection in calcium imaging videos
Elke Kirschbaum, Manuel Haußmann, Steffen Wolf +6
Neuronal assemblies, loosely defined as subsets of neurons with reoccurring spatio-temporally coordinated activation patterns, or "motifs", are thought to be building blocks of neu…