activity
20112024
most citedOpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution

66 citations · 83 across the 7 of their papers we have counts for

collaborators

7 papers

cs.DC2024

Porting HPC Applications to AMD Instinct MI300A Using Unified Memory and OpenMP

Suyash Tandon, Leopold Grinberg, Gheorghe-Teodor Bercea +4

AMD Instinct MI300A is the world's first data center accelerated processing unit (APU) with memory shared between the AMD "Zen 4" EPYC cores and third gener…

cs.CL2021

Can a Fruit Fly Learn Word Embeddings?

Yuchen Liang, Chaitanya K. Ryali, Benjamin Hoover +4

The mushroom body of the fruit fly brain is one of the best studied systems in neuroscience. At its core it consists of a population of Kenyon cells, which receive inputs from mult…

math.OC2020★ 2 cited

Parallel and distributed asynchronous adaptive stochastic gradient methods

Yangyang Xu, Yibo Xu, Yonggui Yan +3

Stochastic gradient methods (SGMs) are the predominant approaches to train deep learning models. The adaptive versions (e.g., Adam and AMSGrad) have been extensively used in practi…

cs.LG2020★ 7 cited

Bio-Inspired Hashing for Unsupervised Similarity Search

Chaitanya K. Ryali, John J. Hopfield, Leopold Grinberg +1

The fruit fly Drosophila's olfactory circuit has inspired a new locality sensitive hashing (LSH) algorithm, FlyHash. In contrast with classical LSH algorithms that produce low dime…

cs.CV2019★ 8 cited

Local Unsupervised Learning for Image Analysis

Leopold Grinberg, John Hopfield, Dmitry Krotov

Local Hebbian learning is believed to be inferior in performance to end-to-end training using a backpropagation algorithm. We question this popular belief by designing a local algo…

physics.bio-ph2017★ 66 cited

OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution

Yu-Hang Tang, Lu Lu, He Li +4

We present OpenRBC, a coarse-grained molecular dynamics code, which is capable of performing an unprecedented in silico experiment --- simulating an entire mammal red blood cell li…

physics.flu-dyn2011

Multiscale simulation of blood flow in brain arteries with an aneurysm

Leopold Grinberg, Vitali Morozov, Dmitry A. Fedosov +4

Interfacing atomistic-based with continuum-based simulation codes is now required in many multiscale physical and biological systems. We present the first results from coupled atom…