16 citations · 39 across the 9 of their papers we have counts for
11 papers
ReactXT: Understanding Molecular "Reaction-ship" via Reaction-Contextualized Molecule-Text Pretraining
Zhiyuan Liu, Yaorui Shi, An Zhang +5
Molecule-text modeling, which aims to facilitate molecule-relevant tasks with a textual interface and textual knowledge, is an emerging research direction. Beyond single molecules,…
ProtT3: Protein-to-Text Generation for Text-based Protein Understanding
Zhiyuan Liu, An Zhang, Hao Fei +4
Language Models (LMs) excel in understanding textual descriptions of proteins, as evident in biomedical question-answering tasks. However, their capability falters with raw protein…
MolTC: Towards Molecular Relational Modeling In Language Models
Junfeng Fang, Shuai Zhang, Chang Wu +6
Molecular Relational Learning (MRL), aiming to understand interactions between molecular pairs, plays a pivotal role in advancing biochemical research. Recently, the adoption of la…
Towards 3D Molecule-Text Interpretation in Language Models
Sihang Li, Zhiyuan Liu, Yanchen Luo +5
Language Models (LMs) have greatly influenced diverse domains. However, their inherent limitation in comprehending 3D molecular structures has considerably constrained their potent…
ReLM: Leveraging Language Models for Enhanced Chemical Reaction Prediction
Yaorui Shi, An Zhang, Enzhi Zhang +2
Predicting chemical reactions, a fundamental challenge in chemistry, involves forecasting the resulting products from a given reaction process. Conventional techniques, notably tho…
Rethinking Tokenizer and Decoder in Masked Graph Modeling for Molecules
Zhiyuan Liu, Yaorui Shi, An Zhang +4
Masked graph modeling excels in the self-supervised representation learning of molecular graphs. Scrutinizing previous studies, we can reveal a common scheme consisting of three ke…