2 papers
cs.DC2019
Parallel and Scalable Precise Clustering for Homologous Protein Discovery
Stuart Byma, Akash Dhasade, Adrian Altenhoff +2
This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a…
q-bio.QM2019
IMPACT: Interval-based Multi-pass Proteomic Alignment with Constant Traceback
Sahand Kashani, Stuart Byma, James R. Larus
Darwin is a genomics co-processor that achieved a 15000x acceleration on long read assembly through innovative hardware and algorithm co-design. Darwins algorithms and hardware imp…