3 papers
q-bio.QM2025
InstructPLM-mu: 1-Hour Fine-Tuning of ESM2 Beats ESM3 in Protein Mutation Predictions
Junde Xu, Yapin Shi, Lijun Lang +5
Multimodal protein language models deliver strong performance on mutation-effect prediction, but training such models from scratch demands substantial computational resources. In t…
cs.LG2025
Protein Inverse Folding From Structure Feedback
Junde Xu, Zijun Gao, Xinyi Zhou +6
The inverse folding problem, aiming to design amino acid sequences that fold into desired three-dimensional structures, is pivotal for various biotechnological applications. Here,…
cs.IR2019
PMD: An Optimal Transportation-based User Distance for Recommender Systems
Yitong Meng, Xinyan Dai, Xiao Yan +5
Collaborative filtering, a widely-used recommendation technique, predicts a user's preference by aggregating the ratings from similar users. As a result, these measures cannot full…