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AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions
Donglai Wei, Kisuk Lee, Hanyu Li +13
Electron microscopy (EM) enables the reconstruction of neural circuits at the level of individual synapses, which has been transformative for scientific discoveries. However, due t…
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale
Zudi Lin, Donglai Wei, Mariela D. Petkova +12
Segmenting 3D cell nuclei from microscopy image volumes is critical for biological and clinical analysis, enabling the study of cellular expression patterns and cell lineages. Howe…
VICE: Visual Identification and Correction of Neural Circuit Errors
Felix Gonda, Xueying Wang, Johanna Beyer +3
A connectivity graph of neurons at the resolution of single synapses provides scientists with a tool for understanding the nervous system in health and disease. Recent advances in…
A Topological Nomenclature for 3D Shape Analysis in Connectomics
Abhimanyu Talwar, Zudi Lin, Donglai Wei +7
One of the essential tasks in connectomics is the morphology analysis of neurons and organelles like mitochondria to shed light on their biological properties. However, these biolo…