2 citations · 4 across the 7 of their papers we have counts for
8 papers
Theoretical Note: On the Practical Uses of Mathematical Theory for Attitude Research
Mark G. Orr, Emily S. Teti, Andrei Bura +1
In attitude theory, formal theoretical predictions come largely from the simulation of computational models. We argue that to push attitude theory further, we should employ mathema…
The site linkage spectrum of data arrays
Christopher Barrett, Andrei Bura, Fenix Huang +1
A new perspective is introduced regarding the analysis of Multiple Sequence Alignments (MSA), representing aligned data defined over a finite alphabet of symbols. The framework is…
The arithmetic topology of genetic alignments
Christopher Barrett, Andrei Bura, Qijun He +2
We propose a novel mathematical paradigm for the study of genetic variation in sequence alignments. This framework originates from extending the notion of pairwise relations, upon…
A computational framework for weighted simplicial homology
Andrei C. Bura, Neelav S. Dutta, Thomas J. X. Li +1
We provide a bottom up construction of torsion generators for weighted homology of a weighted complex over a discrete valuation ring . This is achieved by starti…
Loop Homology of Bi-secondary Structures II
Andrei C. Bura, Qijun He, Christian M. Reidys
In this paper we further describe the features of the topological space obtained from the loop nerve of , for a bi-secondary structure. We will first identify c…
Loop Homology of Bi-secondary Structures
Andrei C. Bura, Qijun He, Christian M. Reidys
In this paper we compute the loop homology of bi-secondary structures. Bi-secondary structures were introduced by Haslinger and Stadler and are pairs of RNA secondary structures, i…
D-chain tomography of networks: a new structure spectrum and an application to the SIR process
Ricky X. F. Chen, Christian M. Reidys, Andrei C. Bura
The analysis of the dynamics on complex networks is closely connected to structural features of the networks. Features like, for instance, graph-cores and node degrees have been st…
On a lower bound for sorting signed permutations by reversals
Andrei C. Bura, Ricky X. F. Chen, Christian M. Reidys
Computing the reversal distances of signed permutations is an important topic in Bioinformatics. Recently, a new lower bound for the reversal distance was obtained via the plane pe…