4 papers
The arithmetic topology of genetic alignments
Christopher Barrett, Andrei Bura, Qijun He +2
We propose a novel mathematical paradigm for the study of genetic variation in sequence alignments. This framework originates from extending the notion of pairwise relations, upon…
Loop Homology of Bi-secondary Structures II
Andrei C. Bura, Qijun He, Christian M. Reidys
In this paper we further describe the features of the topological space obtained from the loop nerve of , for a bi-secondary structure. We will first identify c…
Loop Homology of Bi-secondary Structures
Andrei C. Bura, Qijun He, Christian M. Reidys
In this paper we compute the loop homology of bi-secondary structures. Bi-secondary structures were introduced by Haslinger and Stadler and are pairs of RNA secondary structures, i…
D-chain tomography of networks: a new structure spectrum and an application to the SIR process
Ricky X. F. Chen, Christian M. Reidys, Andrei C. Bura
The analysis of the dynamics on complex networks is closely connected to structural features of the networks. Features like, for instance, graph-cores and node degrees have been st…