1 citations · 1 across the 3 of their papers we have counts for
6 papers
Knot intensity distribution: a local measure of entanglement
Agnese Barbensi, Daniele Celoria
The problem of finding robust and effective methods for locating entanglement in embedded curves is relevant to both applications and theoretical investigations. Rather than focusi…
Homology of homologous knotted proteins
Katherine Benjamin, Lamisah Mukta, Gabriel Moryoussef +4
Quantification and classification of protein structures, such as knotted proteins, often requires noise-free and complete data. Here we develop a mathematical pipeline that systema…
A topological selection of folding pathways from native states of knotted proteins
Agnese Barbensi, Naya Yerolemou, Oliver Vipond +3
Understanding the biological function of knots in proteins and their folding process is an open and challenging question in biology. Recent studies classify the topology and geomet…
Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topology
Agnese Barbensi, Daniele Celoria, Heather A. Harrington +2
Grid diagrams with their relatively simple mathematical formalism provide a convenient way to generate and model projections of various knots. It has been an open question whether…
-distance of knotoids and protein structure
Agnese Barbensi, Dimos Goundaroulis
Recent studies classify the topology of proteins by analysing the distribution of their projections using knotoids. The approximation of this distribution depends on the number of…
Double branched covers of knotoids
Agnese Barbensi, Dorothy Buck, Heather A. Harrington +1
By using double branched covers, we prove that there is a 1-1 correspondence between the set of knotoids in the 2-sphere, up to orientation reversion and rotation, and knots with a…