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q-bio.QM2026
Lightweight Language Models are Prone to Reasoning Errors for Complex Computational Phenotyping Tasks
Sarah Pungitore, Shashank Yadav, David Maughan +1
Although computational phenotyping is a central informatics activity with resulting cohorts supporting a wide variety of applications, it is time-intensive because of manual data r…
q-bio.QM2025
Characterizing Fungal Infections in the All of Us Research Program
Md Fantacher Islam, Emeral Norzagaray, Corneliu Antonescu +1
Fungal infections, such as Coccidioidomycosis, Aspergillosis, and Histoplasmosis, represent a growing public health concern in the United States. The rising incidence of these myco…
q-bio.QM2025
SHREC: A Framework for Advancing Next-Generation Computational Phenotyping with Large Language Models
Sarah Pungitore, Shashank Yadav, Molly Douglas +2
Computational phenotyping is a central informatics activity with resulting cohorts supporting a wide variety of applications. However, it is time-intensive because of manual data r…