6 citations · 20 across the 10 of their papers we have counts for
10 papers
Block Diagram Analysis of a Design Principle for Amplitude-Frequency Profiles in Biological Oscillations
Sidhanta Mohanty, Shaunak Sen
An important design principle for biological oscillators divides the oscillators into two classes: fixed frequency, variable amplitude and fixed amplitude, variable frequency. Beca…
A Kalman Filter Algorithm with Process Noise Covariance Update
Krishan Kumar Gola, Shaunak Sen
Stochastic models in biomolecular contexts can have a state-dependent process noise covariance. The choice of the process noise covariance is an important parameter in the design o…
A Necessary and Sufficient Condition for Local Synchronization in Nonlinear Oscillator Networks
Sanjeev Kumar Pandey, Shaunak Sen, Indra Narayan Kar
Determining conditions on the coupling strength for the synchronization in networks of interconnected oscillators is a challenging problem in nonlinear dynamics. While sophisticate…
Comparative Analysis and Calibration of Low Cost Resistive and Capacitive Soil Moisture Sensor
Sourodip Chowdhury, Shaunak Sen, S. Janardhanan
Soil moisture is an essential parameter in agriculture. It determines several environmental and agricultural activities such as climate change, drought prediction, irrigation, etc.…
On the length scale dependence of DNA conformational change under local perturbation
Soumyadip Banerjee, Kushal Shah, Shaunak Sen
Conformational change of a DNA molecule is frequently observed in multiple biological processes and has been modelled using a chain of strongly coupled oscillators with a nonlinear…
Robustness of a Biomolecular Oscillator to Pulse Perturbations
Soumyadip Banerjee, Shaunak Sen
Biomolecular oscillators can function robustly in the presence of environmental perturbations, which can either be static or dynamic. While the effect of different circuit paramete…
Period-Amplitude Co-variation in Biomolecular Oscillators
Venkat Bokka, Abhishek Dey, Shaunak Sen
The period and amplitude of biomolecular oscillators are functionally important properties in multiple contexts. For a biomolecular oscillator, the overall constraints in how tunin…
A Kalman Filter Approach for Biomolecular Systems with Noise Covariance Updating
Abhishek Dey, Kushal Chakrabarti, Krishan Kumar Gola +1
An important part of system modeling is determining parameter values, particularly for biomolecular systems, where direct measurements of individual parameters are typically hard.…
Non-normality Can Facilitate Pulsing in Biomolecular Circuits
Abhilash Patel, Shaunak Sen
Non-normality can underlie pulse dynamics in many engineering contexts. However, its role in pulses generated in biomolecular contexts is generally unclear. Here, we address this i…
Describing Function-based Approximations of Biomolecular Systems
Abhishek Dey, Shaunak Sen
Mathematical methods provide useful framework for the analysis and design of complex systems. In newer contexts such as biology, however, there is a need to both adapt existing met…