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q-bio.QM2025
Quantifying topological features and irregularities in zebrafish patterns using the sweeping-plane filtration
Nour Khoudari, John Nardini, Alexandria Volkening
Complex patterns emerge across a wide range of biological systems. While such patterns often exhibit remarkable robustness, variation and irregularity exist at multiple scales and…
cs.LG2025
Enhancing generalizability of model discovery across parameter space with multi-experiment equation learning (ME-EQL)
Maria-Veronica Ciocanel, John T. Nardini, Kevin B. Flores +3
Agent-based modeling (ABM) is a powerful tool for understanding self-organizing biological systems, but it is computationally intensive and often not analytically tractable. Equati…