activity
20192022
most citedIntegrated Multi-omics Analysis Using Variational Autoencoders: Application to Pan-cancer Classification

87 citations · 184 across the 8 of their papers we have counts for

collaborators

8 papers

cs.AI2022

Label-dependent and event-guided interpretable disease risk prediction using EHRs

Shuai Niu, Yunya Song, Qing Yin +2

Electronic health records (EHRs) contain patients' heterogeneous data that are collected from medical providers involved in the patient's care, including medical notes, clinical ev…

cs.AI2022★ 20 cited

Label Dependent Attention Model for Disease Risk Prediction Using Multimodal Electronic Health Records

Shuai Niu, Qing Yin, Yunya Song +2

Disease risk prediction has attracted increasing attention in the field of modern healthcare, especially with the latest advances in artificial intelligence (AI). Electronic health…

cs.CL2021

Self-Supervised Detection of Contextual Synonyms in a Multi-Class Setting: Phenotype Annotation Use Case

Jingqing Zhang, Luis Bolanos, Tong Li +6

Contextualised word embeddings is a powerful tool to detect contextual synonyms. However, most of the current state-of-the-art (SOTA) deep learning concept extraction methods remai…

stat.AP2021

Bayesian data assimilation for estimating epidemic evolution: a COVID-19 study

Xian Yang, Shuo Wang, Yuting Xing +4

The evolution of epidemiological parameters, such as instantaneous reproduction number Rt, is important for understanding the transmission dynamics of infectious diseases. Current…

q-bio.PE2020★ 19 cited

A Bayesian Updating Scheme for Pandemics: Estimating the Infection Dynamics of COVID-19

Shuo Wang, Xian Yang, Ling Li +5

Epidemic models play a key role in understanding and responding to the emerging COVID-19 pandemic. Widely used compartmental models are static and are of limited use to evaluate in…

stat.AP2020★ 57 cited

An Epidemiological Modelling Approach for Covid19 via Data Assimilation

Philip Nadler, Shuo Wang, Rossella Arcucci +2

The global pandemic of the 2019-nCov requires the evaluation of policy interventions to mitigate future social and economic costs of quarantine measures worldwide. We propose an ep…

cs.CL2019★ 1 cited

Unsupervised Annotation of Phenotypic Abnormalities via Semantic Latent Representations on Electronic Health Records

Jingqing Zhang, Xiaoyu Zhang, Kai Sun +3

The extraction of phenotype information which is naturally contained in electronic health records (EHRs) has been found to be useful in various clinical informatics applications su…

cs.LG2019★ 87 cited

Integrated Multi-omics Analysis Using Variational Autoencoders: Application to Pan-cancer Classification

Xiaoyu Zhang, Jingqing Zhang, Kai Sun +3

Different aspects of a clinical sample can be revealed by multiple types of omics data. Integrated analysis of multi-omics data provides a comprehensive view of patients, which has…