activity
20132026
most citedDrug-Target Interaction/Affinity Prediction: Deep Learning Models and Advances Review

37 citations · 40 across the 12 of their papers we have counts for

collaborators

14 papers

cs.LG2026

Institutional Equity Holdings Prediction Using Node Affinities of Dynamic Graphs

Emad Izadifar, Zahed Rahmati

Institutional equity holdings disclosed in SEC Form 13F filings provide a rich temporal record of portfolio decisions by large investment managers. However, forecasting future allo…

cs.LG2026

Enhancing Graph Neural Networks Using Proximity Graphs for Dust Source Emission Forecasting

Maryam Sanisales, Zahed Rahmati, Ali Darvishi Boloorani +1

Accurate prediction of dust source emissions is critical for mitigating the significant environmental and health hazards posed by dust storms. Traditional forecasting methods often…

cs.LG2026

Semantic Reasoning in Medicine: The Role of Knowledge Graphs Across Five Key Domains

Haniye Sherafatmandjoo, Mohammad Akbari, Zahed Rahmati

Knowledge graphs (KGs) have emerged as a promising solution for integrating and reasoning over complex biomedical and clinical data in healthcare. By representing structured relati…

cs.LG2026

Where Black-box Drug-Target Interaction Prediction Models Look: Cross-Method Explainability

Ali Vefghi, Zahed Rahmati, Mohammad Akbari

Drug-target interaction (DTI) and affinity (DTA) predictors increasingly achieve strong benchmark scores, yet their internal use of sequence, fingerprint, and graph features often…

q-bio.QM2025★ 37 cited

Drug-Target Interaction/Affinity Prediction: Deep Learning Models and Advances Review

Ali Vefghi, Zahed Rahmati, Mohammad Akbari

Drug discovery remains a slow and expensive process that involves many steps, from detecting the target structure to obtaining approval from the Food and Drug Administration (FDA),…

cs.CL2024★ 2 cited

Relational Graph Convolutional Networks for Sentiment Analysis

Asal Khosravi, Zahed Rahmati, Ali Vefghi

With the growth of textual data across online platforms, sentiment analysis has become crucial for extracting insights from user-generated content. While traditional approaches and…

cs.LG2023

Edge2Node: Reducing Edge Prediction to Node Classification

Zahed Rahmati

Despite the success of graph neural network models in node classification, edge prediction (the task of predicting missing or potential links between nodes in a graph) remains a ch…

cs.CL2021

BERT-DRE: BERT with Deep Recursive Encoder for Natural Language Sentence Matching

Ehsan Tavan, Ali Rahmati, Maryam Najafi +2

This paper presents a deep neural architecture, for Natural Language Sentence Matching (NLSM) by adding a deep recursive encoder to BERT so called BERT with Deep Recursive Encoder…

cs.CG2020

RAC Drawings in Subcubic Area

Zahed Rahmati, Fatemeh Emami

In this paper, we study tradeoffs between curve complexity and area of Right Angle Crossing drawings (RAC drawings), which is a challenging theoretical problem in graph drawing. Gi…

cs.CG2019

Emanation Graph: A Plane Geometric Spanner with Steiner Points

Bardia Hamedmohseni, Zahed Rahmati, Debajyoti Mondal

An emanation graph of grade on a set of points is a plane spanner made by shooting equally spaced rays from each point, where the shorter rays stop the longer ones up…

cs.CG2014

Kinetic -Semi-Yao Graph and its Applications

Zahed Rahmati, Mohammad Ali Abam, Valerie King +1

This paper introduces a new proximity graph, called the -Semi-Yao graph (-SYG), on a set of points in , which is a supergraph of the -nearest neighbor gr…

cs.CG2014

Kinetic Reverse -Nearest Neighbor Problem

Zahed Rahmati, Valerie King, Sue Whitesides

This paper provides the first solution to the kinetic reverse -nearest neighbor (\rknn) problem in , which is defined as follows: Given a set of moving poi…

cs.CG2013

A Simple, Faster Method for Kinetic Proximity Problems

Zahed Rahmati, Mohammad Ali Abam, Valerie King +2

For a set of points in the plane, this paper presents simple kinetic data structures (KDS's) for solutions to some fundamental proximity problems, namely, the all nearest neigh…

cs.CG2013★ 1 cited

Kinetic Data Structures for the Semi-Yao Graph and All Nearest Neighbors in R^d

Zahed Rahmati, Mohammad Ali Abam, Valerie King +1

This paper presents a simple kinetic data structure for maintaining all the nearest neighbors of a set of moving points in , where the trajectory of each point is…