10 citations · 10 across the 2 of their papers we have counts for
2 papers
q-bio.BM2022
LinearCoFold and LinearCoPartition: Linear-Time Algorithms for Secondary Structure Prediction of Interacting RNA molecules
He Zhang, Sizhen Li, Liang Zhang +2
Many ncRNAs function through RNA-RNA interactions. Fast and reliable RNA structure prediction with consideration of RNA-RNA interaction is useful. Some existing tools are less accu…
q-bio.BM2020★ 10 cited
ThreshKnot: Thresholded ProbKnot for Improved RNA Secondary Structure Prediction
Liang Zhang, He Zhang, David H. Mathews +1
RNA structure prediction is a challenging problem, especially with pseudoknots. Recently, there has been a shift from the classical minimum free energy-based methods (MFE) to parti…