255 citations · 265 across the 2 of their papers we have counts for
2 papers
q-bio.BM2020★ 10 cited
ThreshKnot: Thresholded ProbKnot for Improved RNA Secondary Structure Prediction
Liang Zhang, He Zhang, David H. Mathews +1
RNA structure prediction is a challenging problem, especially with pseudoknots. Recently, there has been a shift from the classical minimum free energy-based methods (MFE) to parti…
q-bio.BM2019★ 255 cited
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search
Liang Huang, He Zhang, Dezhong Deng +4
Motivation: Predicting the secondary structure of an RNA sequence is useful in many applications. Existing algorithms (based on dynamic programming) suffer from a major limitation:…