491 citations · 761 across the 7 of their papers we have counts for
Showing 2019Show all
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q-bio.BM2019★ 255 cited
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search
Liang Huang, He Zhang, Dezhong Deng +4
Motivation: Predicting the secondary structure of an RNA sequence is useful in many applications. Existing algorithms (based on dynamic programming) suffer from a major limitation:…
q-bio.BM2019★ 4 cited
LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
He Zhang, Liang Zhang, David H. Mathews +1
RNA secondary structure prediction is widely used to understand RNA function. Recently, there has been a shift away from the classical minimum free energy (MFE) methods to partitio…