742 citations · 1.5k across the 10 of their papers we have counts for
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q-bio.PE2012★ 39 cited
Accurate reconstruction of insertion-deletion histories by statistical phylogenetics
Oscar Westesson, Gerton Lunter, Benedict Paten +1
The Multiple Sequence Alignment (MSA) is a computational abstraction that represents a partial summary either of indel history, or of structural similarity. Taking the former view…
q-bio.PE2011★ 9 cited
Phylogenetic automata, pruning, and multiple alignment
Oscar Westesson, Gerton Lunter, Benedict Paten +1
We present an extension of Felsenstein's algorithm to indel models defined on entire sequences, without the need to condition on one multiple alignment. The algorithm makes use of…