118 citations · 324 across the 21 of their papers we have counts for
3 papers · 1 filter
MOLNs: A cloud platform for interactive, reproducible and scalable spatial stochastic computational experiments in systems biology using PyURDME
Brian Drawert, Michael Trogdon, Salman Toor +2
Computational experiments using spatial stochastic simulations have led to important new biological insights, but they require specialized tools, a complex software stack, as well…
Mesoscopic modeling of stochastic reaction-diffusion kinetics in the subdiffusive regime
Emilie Blanc, Stefan Engblom, Andreas Hellander +1
Subdiffusion has been proposed as an explanation of various kinetic phenomena inside living cells. In order to fascilitate large-scale computational studies of subdiffusive chemica…
Analysis and design of jump coefficients in discrete stochastic diffusion models
Lina Meinecke, Stefan Engblom, Andreas Hellander +1
In computational system biology, the mesoscopic model of reaction-diffusion kinetics is described by a continuous time, discrete space Markov process. To simulate diffusion stochas…