activity
20202026
most citedGraph Denoising Diffusion for Inverse Protein Folding

20 citations · 33 across the 9 of their papers we have counts for

collaborators

9 papers

cs.LG2026

DBMol: Design of High-Affinity, Target-Specific Small Molecules through Structure Prediction Models

Yiming Qin, Kai Yi, Miruna Cretu +3

Designing small molecule ligands that bind with high affinity to specific protein pockets is a fundamental goal in drug discovery, as small molecules constitute a major fraction of…

stat.ML2024

Score-matching-based Structure Learning for Temporal Data on Networks

Hao Chen, Kai Yi

Causal discovery is a crucial initial step in establishing causality from empirical data and background knowledge. Numerous algorithms have been developed for this purpose. Among t…

q-bio.QM2023★ 20 cited

Graph Denoising Diffusion for Inverse Protein Folding

Kai Yi, Bingxin Zhou, Yiqing Shen +2

Inverse protein folding is challenging due to its inherent one-to-many mapping characteristic, where numerous possible amino acid sequences can fold into a single, identical protei…

q-bio.QM2023★ 2 cited

Accurate and Definite Mutational Effect Prediction with Lightweight Equivariant Graph Neural Networks

Bingxin Zhou, Outongyi Lv, Kai Yi +4

Directed evolution as a widely-used engineering strategy faces obstacles in finding desired mutants from the massive size of candidate modifications. While deep learning methods le…

stat.ME2023

Adaptive Importance Sampling and Quasi-Monte Carlo Methods for 6G URLLC Systems

Xiongwen Ke, Houying Zhu, Kai Yi +3

In this paper, we propose an efficient simulation method based on adaptive importance sampling, which can automatically find the optimal proposal within the Gaussian family based o…

eess.IV2022★ 1 cited

Approximate Equivariance SO(3) Needlet Convolution

Kai Yi, Jialin Chen, Yu Guang Wang +4

This paper develops a rotation-invariant needlet convolution for rotation group SO(3) to distill multiscale information of spherical signals. The spherical needlet transform is gen…