155 citations · 168 across the 18 of their papers we have counts for
5 papers · 1 filter
MetaTrinity: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation
Arvid E. Gollwitzer, Mohammed Alser, Joel Bergtholdt +5
Metagenomics, the study of genome sequences of diverse organisms cohabiting in a shared environment, has experienced significant advancements across various medical and biological…
SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences
Maximilian-David Rumpf, Mohammed Alser, Arvid E. Gollwitzer +5
Computational complexity is a key limitation of genomic analyses. Thus, over the last 30 years, researchers have proposed numerous fast heuristic methods that provide computational…
A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
Viorel Munteanu, Victor Gordeev, Michael Saldana +16
In light of the continuous transmission and evolution of SARS-CoV-2 coupled with a significant decline in clinical testing, there is a pressing need for scalable, cost-effective, l…
SARS-CoV-2 Wastewater Genomic Surveillance: Approaches, Challenges, and Opportunities
Viorel Munteanu, Michael A. Saldana, David Dreifuss +29
During the SARS-CoV-2 pandemic, wastewater-based genomic surveillance (WWGS) emerged as an efficient viral surveillance tool that takes into account asymptomatic cases and can iden…
Genomic reproducibility in the bioinformatics era
Pelin Icer Baykal, Paweł P. Łabaj, Florian Markowetz +4
In biomedical research, validation of a new scientific discovery is tied to the reproducibility of its experimental results. However, in genomics, the definition and implementation…