4 citations · 4 across the 3 of their papers we have counts for
4 papers
Inference-Time Projection for Physically Valid Biomolecular Diffusion Models
Qurat-ul-ain, Yee Whye Teh, Charlotte M. Deane +1
AlphaFold 3-style cofolding models predict biomolecular complexes with high structural accuracy, yet a large fraction of their outputs are physically invalid: chains overlap at int…
Spectral Diffusion for Protein Dynamics
Hew Phipps, Matteo Cagiada, Santiago D. Villalba +1
Generative models present a promising alternative to expensive molecular dynamics for computationally querying protein dynamics, yet many existing approaches treat ensembles as uno…
Prediction of native contacts in proteins from an out--of--equilibrium coevolutionary process
D. Oriani, M. Cagiada, G. Tiana
The analysis of coevolution of residues in homologous proteins is a powerful tool to predict their native conformation. The standard framework in which coevolutionary analysis is u…
Statistical mechanical properties of sequence space determine the efficiency of the various algorithms to predict interaction energies and native contacts from protein coevolution
G. Franco, M. Cagiada, G. Bussi +1
Studying evolutionary correlations in alignments of homologous sequences by means of an inverse Potts model has proven useful to obtain residue-residue contact energies and to pred…