17 citations · 34 across the 5 of their papers we have counts for
8 papers
Don't Gamble, GAMBLe: An Analytical Framework for AI-Driven Research Systems
Marquita Ellis, Paul Castro
AI-Driven Research Systems (ADRS) -- systems coupling LLMs with automated evaluation to discover algorithms, proofs, and designs -- are being optimized and adopted across domains,…
Measuring Agents in Production
Melissa Z. Pan, Negar Arabzadeh, Riccardo Cogo +22
LLM-based agents already operate in production across many industries, yet we lack an understanding of what technical methods make deployments successful. We present the first syst…
Toward Open Earth Science as Fast and Accessible as Natural Language
Marquita Ellis, Iksha Gurung, Muthukumaran Ramasubramanian +1
Is natural-language-driven earth observation data analysis now feasible with the assistance of Large Language Models (LLMs)? For open science in service of public interest, feasibi…
10 Years Later: Cloud Computing is Closing the Performance Gap
Giulia Guidi, Marquita Ellis, Aydin Buluc +2
Can cloud computing infrastructures provide HPC-competitive performance for scientific applications broadly? Despite prolific related literature, this question remains open. Answer…
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly
Giulia Guidi, Oguz Selvitopi, Marquita Ellis +3
One of the most computationally intensive tasks in computational biology is de novo genome assembly, the decoding of the sequence of an unknown genome from redundant and erroneous…
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment
Alberto Zeni, Giulia Guidi, Marquita Ellis +6
Pairwise sequence alignment is one of the most computationally intensive kernels in genomic data analysis, accounting for more than 90% of the runtime for key bioinformatics applic…