82 citations · 503 across the 19 of their papers we have counts for
19 papers
Rare Events Analysis and Computation for Stochastic Evolution of Bacterial Populations
Yingxue Su, Brett Geiger, Ilya Timofeyev +2
In this paper, we develop a computational approach for computing most likely trajectories describing rare events that correspond to the emergence of non-dominant genotypes. This wo…
An Operator-Splitting Approach for Variational Optimal Control Formulations for Diffeomorphic Shape Matching
Andreas Mang, Jiwen He, Robert Azencott
We present formulations and numerical algorithms for solving diffeomorphic shape matching problems. We formulate shape matching as a variational problem governed by a dynamical sys…
Automatic classification of deformable shapes
Hossein Dabirian, Radmir Sultamuratov, James Herring +4
Let be a dataset of smooth 3D-surfaces, partitioned into disjoint classes , . We show how optimized diffeomorphic registration applied…
CLAIRE -- Parallelized Diffeomorphic Image Registration for Large-Scale Biomedical Imaging Applications
Naveen Himthani, Malte Brunn, Jae-Youn Kim +3
We study the performance of CLAIRE -- a diffeomorphic multi-node, multi-GPU image-registration algorithm, and software -- in large-scale biomedical imaging applications with billio…
Stochastic Neural Networks for Automatic Cell Tracking in Microscopy Image Sequences of Bacterial Colonies
Sorena Sarmadi, James J. Winkle, Razan N. Alnahhas +4
Our work targets automated analysis to quantify the growth dynamics of a population of bacilliform bacteria. We propose an innovative approach to frame-sequence tracking of deforma…
Diffeomorphic Shape Matching by Operator Splitting in 3D Cardiology Imaging
Peng Zhang, Andreas Mang, Jiwen He +3
We develop an operator splitting approach to solve diffeomorphic matching problems for sequences of surfaces in three-dimensional space. The goal is to smoothly match, at a very fa…