activity
20202024
most citedLeak Proof PDBBind: A Reorganized Dataset of Protein-Ligand Complexes for More Generalizable Binding Affinity Prediction

23 citations · 28 across the 8 of their papers we have counts for

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5 papers · 1 filter

physics.chem-ph2024

Deep Learning of ab initio Hessians for Transition State Optimization

Eric C. -Y. Yuan, Anup Kumar, Xingyi Guan +5

Identifying transition states -- saddle points on the potential energy surface connecting reactant and product minima -- is central to predicting kinetic barriers and understanding…

physics.chem-ph2023★ 1 cited

Beyond potential energy surface benchmarking: a complete application of machine learning to chemical reactivity

Xingyi Guan, Joseph Heindel, Taehee Ko +2

We train an equivariant machine learning model to predict energies and forces for a real-world study of hydrogen combustion under conditions of finite temperature and pressure. Thi…

physics.chem-ph2023★ 1 cited

Using Diffusion Maps to Analyze Reaction Dynamics for a Hydrogen Combustion Benchmark Dataset

Taehee Ko, Joseph Heindel, Xingyi Guan +3

We use local diffusion maps to assess the quality of two types of collective variables (CVs) for a recently published hydrogen combustion benchmark dataset~\cite{guan2022benchmark}…

physics.chem-ph2021★ 1 cited

NewtonNet: A Newtonian message passing network for deep learning of interatomic potentials and forces

Mojtaba Haghighatlari, Jie Li, Xingyi Guan +10

We report a new deep learning message passing network that takes inspiration from Newton's equations of motion to learn interatomic potentials and forces. With the advantage of dir…

physics.chem-ph2020★ 2 cited

Learning to Make Chemical Predictions: the Interplay of Feature Representation, Data, and Machine Learning Algorithms

Mojtaba Haghighatlari, Jie Li, Farnaz Heidar-Zadeh +3

Recently supervised machine learning has been ascending in providing new predictive approaches for chemical, biological and materials sciences applications. In this Perspective we…