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q-bio.QM2021
Boost-RS: Boosted Embeddings for Recommender Systems and its Application to Enzyme-Substrate Interaction Prediction
Xinmeng Li, Li-ping Liu, Soha Hassoun
Despite experimental and curation efforts, the extent of enzyme promiscuity on substrates continues to be largely unexplored and under documented. Recommender systems (RS), which a…
q-bio.QM2019
Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling
Ramtin Hosseini, Neda Hassanpour, Li-Ping Liu +1
Motivation: Untargeted metabolomics comprehensively characterizes small molecules and elucidates activities of biochemical pathways within a biological sample. Despite computationa…