4 citations · 7 across the 5 of their papers we have counts for
5 papers
Causal Models, Prediction, and Extrapolation in Cell Line Perturbation Experiments
James P. Long, Yumeng Yang, Kim-Anh Do
In cell line perturbation experiments, a collection of cells is perturbed with external agents (e.g. drugs) and responses such as protein expression measured. Due to cost constrain…
A Framework for Mediation Analysis with Multiple Exposures, Multivariate Mediators, and Non-Linear Response Models
James P. Long, Ehsan Irajizad, James D. Doecke +2
Mediation analysis seeks to identify and quantify the paths by which an exposure affects an outcome. Intermediate variables which are effected by the exposure and which effect the…
Sparse tree-based clustering of microbiome data to characterize microbiome heterogeneity in pancreatic cancer
Yushu Shi, Liangliang Zhang, Kim-Anh Do +2
There is a keen interest in characterizing variation in the microbiome across cancer patients, given increasing evidence of its important role in determining treatment outcomes. He…
aPCoA: Covariate Adjusted Principal Coordinates Analysis
Yushu Shi, Liangliang Zhang, Kim-Anh Do +2
In fields such as ecology, microbiology, and genomics, non-Euclidean distances are widely applied to describe pairwise dissimilarity between samples. Given these pairwise distances…
NExUS: Bayesian simultaneous network estimation across unequal sample sizes
Priyam Das, Christine Peterson, Kim-Anh Do +2
Network-based analyses of high-throughput genomics data provide a holistic, systems-level understanding of various biological mechanisms for a common population. However, when esti…