3 citations · 6 across the 5 of their papers we have counts for
6 papers
Minimality in Reflexive and Stoichiometric Autocatalysis
Richard Golnik, Thomas Gatter, Wim Hordijk +2
Autocatalysis, the ability of a chemical subsystem to sustain its own constituents when supplied with sufficient food molecules, has been closely related to the origin of life on E…
Bridging two theoretical frameworks of autocatalysis: RAF sets and stoichiometric autocatalysis
Richard Golnik, Thomas Gatter, Wim Hordijk +2
Autocatalysis lies at the heart of many (bio)chemical processes and is key to processes leading up to the origin of life. Two seemingly very different formalisms have emerged that…
BiRNe: Symbolic bifurcation analysis of reaction networks with Python
Richard Golnik, Thomas Gatter, Peter F. Stadler +1
Computer algebra methods for analyzing reaction networks often rely on the assumption of mass-action kinetics, which transform the governing ODEs into polynomial systems amenable t…
Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks
Richard Golnik, Thomas Gatter, Peter F. Stadler +1
Autocatalysis is an important feature of metabolic networks, contributing crucially to the self-maintenance of organisms. Autocatalytic subsystems of chemical reaction networks (CR…
A Short Note on Relevant Cuts
Nico Domschke, Thomas Gatter, Richard Golnik +1
The set of relevant cuts in a graph is the union of all minimum weight bases of the cut space. A cut is relevant if and only if it is the a minimum weight cut between two distinct…
Convexity deficit of benzenoids
Nino Bašić, Sarah Berkemer, Jörg Fallmann +6
In 2012, a family of benzenoids was introduced by Cruz, Gutman, and Rada, which they called convex benzenoids. In this paper we introduce the convexity deficit, a new topological i…