104 citations · 226 across the 9 of their papers we have counts for
10 papers
Optical Diffraction Tomography Meets Fluorescence Localization Microscopy
Thanh-An Pham, Emmanuel Soubies, Ferréol Soulez +1
We show that structural information can be extracted from single molecule localization microscopy (SMLM) data. More precisely, we reinterpret SMLM data as the measures of a phasele…
Deep Unrolling for Nonconvex Robust Principal Component Analysis
Elizabeth Z. C. Tan, Caroline Chaux, Emmanuel Soubies +1
We design algorithms for Robust Principal Component Analysis (RPCA) which consists in decomposing a matrix into the sum of a low rank matrix and a sparse matrix. We propose a deep…
Accelerating Non-Negative and Bounded-Variable Linear Regression Algorithms with Safe Screening
Cassio F. Dantas, Emmanuel Soubies, Cédric Févotte
Non-negative and bounded-variable linear regression problems arise in a variety of applications in machine learning and signal processing. In this paper, we propose a technique to…
Leveraging Joint-Diagonalization in Transform-Learning NMF
Sixin Zhang, Emmanuel Soubies, Cédric Févotte
Non-negative matrix factorization with transform learning (TL-NMF) is a recent idea that aims at learning data representations suited to NMF. In this work, we relate TL-NMF to the…
Expanding boundaries of Gap Safe screening
Cassio F. Dantas, Emmanuel Soubies, Cédric Févotte
Sparse optimization problems are ubiquitous in many fields such as statistics, signal/image processing and machine learning. This has led to the birth of many iterative algorithms…
Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM
Mona Zehni, Laurène Donati, Emmanuel Soubies +2
Single-particle cryo-electron microscopy (cryo-EM) reconstructs the three-dimensional (3D) structure of bio-molecules from a large set of 2D projection images with random and unkno…
Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model
Thanh-an Pham, Emmanuel Soubies, Ahmed Ayoub +3
A broad class of imaging modalities involve the resolution of an inverse-scattering problem. Among them, three-dimensional optical diffraction tomography (ODT) comes with its own c…
Pocket Guide to Solve Inverse Problems with GlobalBioIm
Emmanuel Soubies, Ferréol Soulez, Michael T. McCann +5
GlobalBioIm is an open-source MATLAB library for solving inverse problems. The library capitalizes on the strong commonalities between forward models to standardize the resolution…
The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy
Quentin Denoyelle, Vincent Duval, Gabriel Peyré +1
This paper showcases the theoretical and numerical performance of the Sliding Frank-Wolfe, which is a novel optimization algorithm to solve the BLASSO sparse spikes super-resolutio…
Efficient Inversion of Multiple-Scattering Model for Optical Diffraction Tomography
Emmanuel Soubies, Thanh-An Pham, Michael Unser
Optical diffraction tomography relies on solving an inverse scattering problem governed by the wave equation. Classical reconstruction algorithms are based on linear approximations…